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[COLOR=purple] Hello everybody! I am an Italian student and I'm starting to learn something about bioinformatics and molecular biology! I have a big problem and I don't know how find a solution! ... How to get the promoter sequence of a gene - (Mar/06/2004 )
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www.protocol-online.org/biology-forums/posts/2931.html
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PlantPromDB - A Database of Plant Promoter Sequences ; ... PromoterInspector - Prediction of promoter regions in mammalian genomic sequences ; ... PromoterScan 2 - predicts putative eukaryotic Pol II promoter sequences ;
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bioportal.weizmann.ac.il/toolbox/seq_analysis/promoters...
bioportal.weizmann.ac.il/toolbox/seq_analysis/promoters.html
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Promoter - all the DNA sequences containing binding sites for RNA polymerase and the transcription factors necessary for normal transcription...
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www.cc.ndsu.nodak.edu/instruct/mcclean/plsc731/transcri...
www.cc.ndsu.nodak.edu/instruct/mcclean/plsc731/transcript/transcript1.htm
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Using TRES you can simultaneously search up to 20 promoter sequences for known transcription factor binding sites, cis-acting elements, palindromic motifs or conserved k-tuples (phylogenetic footprints).
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bioportal.bic.nus.edu.sg/tres/
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This page lets you extract and download promoter sequences defined in EPD from corresponding EMBL sequences. Sequence download is limited to segments smaller than 16kb in the range between -9999 and 10000 bp relative to the transcription start site.
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www.epd.isb-sib.ch/seq_download.html
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Technical Resources > Appendix > Molecular Biology Tables ... Figure 1. Consensus Promoter Sequences. The +1 base (in bold) is the first base incorporated into RNA during transcription. The underline indicates the minimum sequence required for efficient transcription.
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www.ambion.com/techlib/append/promoter_sequences.html
www.ambion.com/techlib/append/promoter_sequences.html
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1. Promoter sequences ... The promoter sequence has two characteristic sequences by which it is recognised (Fig. 4.4). These sequences are read as they occur on the coding strand of DNA in the 5’ to 3’ direction. ... Note that DNA sequences are continuous and that there are no gaps demarcating promoter,
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staff.um.edu.mt/acus1/4genfunction.htm
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We compared the distribution of predicted intrinsic curvature of Escherichia coli and human promoter sequences with the distribution of curvature of randomly selected coding and non-coding fragments from these organisms.
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www.bioinfo.de/isb/1999/01/0017/
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Interaction of Eukaryotic Class-B Transcription Factors and Chick Progesterone-Receptor Complex with Conalbumin Promoter Sequences. B.L. Davison, E.R. Mulvihill, J.M. Egly, and P. Chambon (1983); Cold Spring Harb Symp Quant Biol 47, 965-975 ;
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www.sciencemag.org/cgi/content/abstract/209/4463/1406
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